Matches in Nanopublications for { ?s <http://www.w3.org/2004/02/skos/core#definition> ?o ?g. }
- Reproduction-Study definition "A study that reproduces another study with same methodology and same tools (direct reproduction)." assertion.
- Replication-Study definition "A study that replicates another study with different methodology or conditions." assertion.
- Reproduction-Replication-Study definition "A study that is both, a reproduction as well as replication study." assertion.
- hasScopeDescription definition "Links a FORRT replicatoin study to a description of its scope, answering the question of what part of the original claim is reproduced or replicated." assertion.
- hasScopeDescription definition "Links a FORRT replicatoin study to a description of its scope, answering the question of what part of the original claim is reproduced or replicated." assertion.
- hasMethodologyDescription definition "Links a FORRT replication study to a description of its methodology, answering the question of how the original claim was validated." assertion.
- hasDeviationDescription definition "Links a FORRT replication study to the description of any deviation from the original methodology." assertion.
- hasDisciplines definition "Links an entitiy, e.g. a FORRT replication study, to its scientific discipline." assertion.
- hasDiscipline definition "Links an entitiy, e.g. a FORRT replication study, to its scientific discipline." assertion.
- asAidaStatement definition "Links a FORRT claim to its representation as an AIDA statement." assertion.
- NewTest definition "testing..." assertion.
- targetsClaim definition "Links a FORRT Replication study to the FORRT claim it targets." assertion.
- FORRT-Replication-Outcome definition "The outcome of a replication study according to the FORRT framework." assertion.
- isOutcomeOf definition "Links an outcome to the replication study according to FORRT." assertion.
- hasOutcomeRepository definition "Links a FORRT replication outcome to a repository URL where the files can be downloaded." assertion.
- ValidationStatus definition "The status of validation of a concluded replication study." assertion.
- hasValidationStatus definition "Links a replication study outcome to its validation status (e.g. Validated, Contradicted, etc.)." assertion.
- hasConclusion definition "Links a replication study outcome to a description of its overall conclusion." assertion.
- hasConclusionDescription definition "Links a replication study outcome to a description of its overall conclusion." assertion.
- hasEvidenceDescription definition "Links a replication study outcome to a description of the evidence of its conclusion." assertion.
- ConfidenceLevel definition "Levels of how confident one is about the results of a study." assertion.
- hasConfidenceLevel definition "Links the outcome of a replication study to its confidence level." assertion.
- hasLimitationsDescription definition "Links an outcome of a replication study to a description of its limitations." assertion.
- hasDistributionRange definition "Links an organism or taxon to a geographical distribution range (chorotype)" assertion.
- hasDistributionRange definition "Links an organism or taxon to a geographical distribution range (chorotype)" assertion.
- hasDistributionRange definition "Links an organism or taxon to a geographical distribution range (chorotype)" assertion.
- hasDistributionRange definition "Links an organism or taxon to a geographical distribution range (chorotype)" assertion.
- 20260316T134428-06 definition "measuring air temp at height 1.7 meter" assertion.
- 20260316T134428-06 definition "measuring air temp at height 1.7 meter" assertion.
- 20260316T153723-06 definition "measuring air temp at height 1.7 meter" assertion.
- 20260316T153723-06 definition "measuring air temp at height 1.7 meter" assertion.
- 20260317T115048-65 definition "I am measuring air temp at height 1.7 meter" assertion.
- Chorotype definition "This term is used to group together similar biogeographical ranges." assertion.
- Test definition "This is just for testing..." assertion.
- Test definition "This is just for testing..." assertion.
- vector-graphic definition "A digital image in the form of a vector graphic representation." assertion.
- vector-graphic definition "A digital image in the form of a vector graphic representation." assertion.
- SAC++ definition "Stable states in complex systems correspond to local minima on the associated potential energy surface. Transitions between these local minima govern the dynamics of such systems. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and isolating the relevant species in experiments is difficult. Most of the time, the system remains near a local minimum, with rare, large fluctuations leading to transitions between minima. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This work aims to formulate the problem of finding the minimum energy barrier between two stable states in the system's state space as a cost-minimization problem. It is proposed to solve this problem using reinforcement learning algorithms. The exploratory nature of reinforcement learning agents enables efficient sampling and determination of the minimum energy barrier for transitions." assertion.
- SAC-TD3Hybrid definition "SAC-TD3 is an algorithm which has been used to estimate the reaction barrier given a potential energy surface. Stable states in complex systems correspond to local minima on the associated potential energy surface, transitions between which govern the dynamics of the system. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and the system remains near a local minimum for most of the time. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This problem has is formulated as a cost-minimization problem and solved using a reinforcement learning algorithm which is a hybrid of the existing SAC and TD3 algorithms. It incorporates the idea of entropy regularization from SAC while borrowing target policy smoothening, delayed policy updates from the TD3 algorithm. The exploratory nature of the algorithm enables efficient sampling and better estimation of the minimum energy barrier for transitions." assertion.
- SAC-TD3Hybrid definition "SAC-TD3 Hybrid is an algorithm which has been used to estimate the reaction barrier given a potential energy surface. It incorporates elements from both the TD3 and the SAC algorithms. Stable states in complex systems correspond to local minima on the associated potential energy surface, transitions between which govern the dynamics of the system. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and the system remains near a local minimum for most of the time. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This problem has is formulated as a cost-minimization problem and solved using the above mentioned reinforcement learning algorithm. It incorporates the idea of entropy regularization from SAC while borrowing target policy smoothening, delayed policy updates from the TD3 algorithm. The exploratory nature of the algorithm enables efficient sampling and better estimation of the minimum energy barrier for transitions." assertion.
- SAC-TD3Hybrid definition "SAC-TD3 is an algorithm incorporating elements both from the SAC and TD3 algorithms for reinforcement learning. It incorporates the idea of entropy regularization from SAC while borrowing target policy smoothening, delayed policy updates from the TD3 algorithm. It has been used to estimate the reaction barrier given a potential energy surface. Stable states in complex systems correspond to local minima on the associated potential energy surface, transitions between which govern the dynamics of the system. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and the system remains near a local minimum for most of the time. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This problem has is formulated as a cost-minimization problem and solved using the aforementioned reinforcement learning algorithm. The exploratory nature of the algorithm enables efficient sampling and better estimation of the minimum energy barrier for transitions." assertion.
- RighteousPersonsFoundation definition "A nonprofit organization that funds Jewish arts and culture, support for holocaust survivors, Jewish community social services, and interfaith leadership" assertion.
- SAC-TD3_Hybrid definition "SAC-TD3 is an algorithm incorporating elements both from the SAC and TD3 algorithms for reinforcement learning. It incorporates the idea of entropy regularization from SAC while borrowing target policy smoothening, delayed policy updates from the TD3 algorithm. It has been used to estimate the reaction barrier given a potential energy surface. Stable states in complex systems correspond to local minima on the associated potential energy surface, transitions between which govern the dynamics of the system. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and the system remains near a local minimum for most of the time. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This problem has is formulated as a cost-minimization problem and solved using the aforementioned reinforcement learning algorithm. The exploratory nature of the algorithm enables efficient sampling and better estimation of the minimum energy barrier for transitions." assertion.
- Detective definition "individual who investigates crimes, gathers clues, and solves mysteries, typically using analytical skills and reasoning." assertion.
- catchphrase definition "A phrase or expression that is commonly associated with a character, often repeated for comedic or dramatic effect." assertion.
- AnimatedCharacter definition "A character created for animation that appears in television shows, films, or comic books and often has distinct voices, personality traits, and appearances that may evolve over time." assertion.
- AnimatedCharacter definition "A character created for animation that appears in television shows, films, or comic books and often has distinct voices, personality traits, and appearances that may evolve over time." assertion.
- deputy_commissioner definition "A police official of higher ranker" assertion.
- Serkil definition "a person who commits a series of murders, often with no apparent motive and typically following a characteristic, predictable behaviour pattern." assertion.
- hen definition "female chicken" assertion.
- Cthulhu_Mythos definition "The Cthulhu Mythos is a shared universe originated by H.P. Lovecraft, consisting of stories that revolve around ancient cosmic deities like Cthulhu. It represents the theme of humanity's insignificance in the vast, indifferent universe." assertion.
- WaterType definition "Water is one of the three basic elemental types of pocket monsters, along with Fire and Grass" assertion.
- tamagotchi-adult definition "A Tamagotchi that is in the adult stage. It is usually the last stage before death. It is the longest stage in a Tamagotchi's life span (besides a senior). Upon evolving into an adult, the Tamagotchi will unlock multiple new features and abilities." assertion.
- baddestMan definition ""A title used to refer to a person who is widely regarded as the most physically dominant and intimidating fighter in the world, often associated with boxing or combat sports. Historically linked to Mike Tyson during his reign as heavyweight boxing champion."" assertion.
- Reference_Sequence definition "TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP" assertion.
- Protein_Sequence definition "A sequence of letters representing the 20 standard amino acids." assertion.
- Composition_Vector definition "A vector stating how many amino acids are present in the protein sequence in alphabetical order, e.g. <A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y>" assertion.
- Reference_Sequence definition "TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP" assertion.
- Sequence_Length definition "An integer describing amount of amino acids" assertion.
- ACE2_A12C definition "A12C Mutational Variant of P0DTC2 ACE2 Receptor Binding Domain" assertion.
- structural_metric definition "A quantitative metric that describes structural properties of predicted the tertiary structure of a protein by a structure prediction algorithm." assertion.
- RMSD definition "Average distance between corresponding atoms of two superimposed protein structures, calculated by the square root of the average of the squared coordinate differences, indicating overall structural similarity." assertion.
- TM_Score definition "Normalized score ranging from 0 to 1, evaluating the structural similarity between protein structures, less sensitive to local variations, indicating overall structural similarity with a focus on fold recognition." assertion.
- Solvent_Accessible_Surface_Area definition "Measures the surface area of a protein that is accessible to a solvent, which can impact protein stability and interactions." assertion.
- Electrostatic_Potential definition "Variation in the electrostatic potential on the protein surface, affecting protein interactions and binding affinity." assertion.
- Average_Hydrophobicity definition "The hydrophobicity of the predicted structures is quantified with calculating the average hydrophobicity according to the Kyte-Doolittle scale. The scale is used for detecting and quantifying hydrophobic regions of proteins, where a region with a positive value indicating hydrophobicity. The scale assigns a hydropathy score to amino acids and suggests a window size that is optimal for the type of protein." assertion.
- pLDDT definition "The predicted local distance difference test is a confidence score indicating the predicted local accuracy and internal protein dynamics of a protein structure, indicating the transient nature of secondary structures and their potential for disorder–order transitions." assertion.
- AgMata definition "Prediction of protein regions that are likely to cause beta-aggregation" assertion.
- disoMine definition "Prediction of protein disorder from sequence only" assertion.
- earlyFolding definition "Prediction of protein early folding regions from sequence only" assertion.
- DynaMine definition "Prediction of protein backbone dynamics from sequence only" assertion.
- emperical_metric definition "A quantitative metric that describes biological property of a protein that has been found empirically in a lab." assertion.
- ACE2_binding definition "The binding strength of the receptor binding domain quantified with log(Kd) found through Deep Mutational Scanning." assertion.
- DynaMine definition "Prediction of protein backbone dynamics from sequence only" assertion.
- RMSD definition "Average distance between corresponding atoms of two superimposed protein structures, calculated by the square root of the average of the squared coordinate differences, indicating overall structural similarity." assertion.
- TM_Score definition "Normalized score ranging from 0 to 1, evaluating the structural similarity between protein structures, less sensitive to local variations, indicating overall structural similarity with a focus on fold recognition." assertion.
- Solvent_Accessible_Surface_Area definition "Measures the surface area of a protein that is accessible to a solvent, which can impact protein stability and interactions." assertion.
- Electrostatic_Potential definition "Variation in the electrostatic potential on the protein surface, affecting protein interactions and binding affinity." assertion.
- pLDDT definition "The predicted local distance difference test is a confidence score indicating the predicted local accuracy and internal protein dynamics of a protein structure, indicating the transient nature of secondary structures and their potential for disorder–order transitions." assertion.
- Average_Hydrophobicity definition "The hydrophobicity of the predicted structures is quantified with calculating the average hydrophobicity according to the Kyte-Doolittle scale. The scale is used for detecting and quantifying hydrophobic regions of proteins, where a region with a positive value indicating hydrophobicity. The scale assigns a hydropathy score to amino acids and suggests a window size that is optimal for the type of protein." assertion.
- AgMata definition "Prediction of protein regions that are likely to cause beta-aggregation" assertion.
- disoMine definition "Prediction of protein disorder from sequence only" assertion.
- earlyFolding definition "Prediction of protein early folding regions from sequence only" assertion.
- DynaMine definition "Prediction of protein backbone dynamics from sequence only" assertion.
- structural_metric definition "A quantitative metric that describes structural properties of predicted the tertiary structure of a protein by a structure prediction algorithm." assertion.
- emperical_metric definition "A quantitative metric that describes biological property of a protein that has been found empirically in a lab." assertion.
- hackathon definition "an event where hacking happens" assertion.
- actress definition "people who use acting as a way of living" assertion.
- GenuineSemanticPublishing definition GenuineSemanticPublishingCriteria assertion.
- GenuineSemanticPublishing definition GenuineSemanticPublishingCriteria assertion.
- GenuineSemanticPublishing definition GenuineSemanticPublishingCriteria assertion.
- GenuineSemanticPublishing definition GenuineSemanticPublishingCriteria assertion.
- GenuineSemanticPublishing definition GenuineSemanticPublishingCriteria assertion.
- Emerging-Community definition "A FAIR Implementation Community that hasn't reached maturity yet" assertion.
- Emerging-Community definition "An early-stage community committed to adopting and promoting FAIR principles for its data and services from the outset." assertion.
- Emerging-Community definition "An early-stage community committed to adopting and promoting FAIR principles for its data and services from the outset." assertion.
- Mature-Community definition "A FAIR Implementation Community that has reached maturity" assertion.
- Mature-Community definition "A well-established community interested to implement FAIR in their data and services." assertion.
- Mature-Community definition "A well-established community interested to implement FAIR in their data and services." assertion.
- Domain-Specific-Registry definition "A registry designed to collect, provide access to, and enable searching of data within a particular domain or subject area" assertion.