Matches in Nanopublications for { ?s ?p ?o <http://purl.org/np/RArAFrdM4rux7Cwl-lT_a4JzGk9tcGItbpd7ykkbD3S2M#assertion>. }
- category label "category - Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. * In a neo4j database this MAY correspond to the neo4j label tag. * In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, ... In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}" assertion.
- description label "description - a human-readable description of an entity" assertion.
- publications label "publications - One or more publications that report the statement expressed in an Association, or provide information used as evidence supporting this statement." assertion.
- association_type label "association type - rdf:type of biolink:Association should be fixed at rdf:Statement" assertion.
- provided_by label "provided by - The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph." assertion.
- has_phenotype label "has phenotype - holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). In SNOMEDCT, disorders with keyword 'characterized by' should translate into this predicate." assertion.
- treats label "treats - holds between a therapeutic procedure or chemical entity and a disease or phenotypic feature that it is used to treat" assertion.
- subject label "subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- object label "object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- id label "id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" assertion.
- has_evidence label "has evidence - connects an association to an instance of supporting evidence" assertion.
- negated label "negated - if set to true, then the association is negated i.e. is not true" assertion.
- interacts_with label "interacts with - holds between any two entities that directly or indirectly interact with each other" assertion.
- correlated_with label "correlated with - A relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated using a correlation analysis method." assertion.
- affects label "affects - describes an entity that has a direct affect on the state or quality of another existing entity. Use of the 'affects' predicate implies that the affected entity already exists, unlike predicates such as 'affects risk for' and 'prevents, where the outcome is something that may or may not come to be." assertion.
- has_confidence_level label "has confidence level - connects an association to a qualitative term denoting the level of confidence" assertion.
- treated_by label "treated by - holds between a disease or phenotypic feature and a therapeutic process or chemical entity that is used to treat the condition" assertion.
- aggregator_knowledge_source label "aggregator knowledge source - An intermediate aggregator resource from which knowledge expressed in an Association was retrieved downstream of the original source, on its path to its current serialized form." assertion.
- associated_with label "associated with - Expresses a relationship between two named things where the relationship is typically generated statistically (though not in all cases), and is weaker than its child, 'correlated with', but stronger than its parent, 'related to'. This relationship holds between two concepts represented by variables for which a statistical dependence is demonstrated. E.g. the statement “Atrial Fibrillation (Afib) is associated with Myocardial Infarction (MI)” asserts that having Afib is not statistically independent from whether a patient will also have MI. Note that in Translator associations, the subject and object concepts may map exactly to the statistical variables, or represent related entities for which the variables serve as proxies in an Association (e.g. diseases, chemical entities or processes)." assertion.
- ameliorates label "ameliorates - A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure, clinical intervention) and a condition (a phenotype or disease), where the presence of the entity reduces or eliminates some or all aspects of the condition." assertion.
- stage_qualifier label "stage qualifier - stage during which gene or protein expression of takes place." assertion.
- qualifiers label "qualifiers - connects an association to qualifiers that modify or qualify the meaning of that association" assertion.
- name label "name - A human-readable name for an attribute or entity." assertion.
- has_drug label "has drug - connects an entity to one or more drugs" assertion.
- prevents label "prevents - holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical entity, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature." assertion.
- predisposes label "predisposes - holds between two entities where exposure to one entity increases the chance of developing the other" assertion.
- positively_correlated_with label "positively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move together in the same direction (i.e. increased in one or presence of one correlates with an increase or presence of the other)." assertion.
- narrow_match label "narrow match - a list of terms from different schemas or terminology systems that have a narrower, more specific meaning. Narrower terms are typically shown as children in a hierarchy or tree." assertion.
- xref label "xref - Alternate CURIEs for a thing" assertion.
- xenologous_to label "xenologous to - a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor." assertion.
- volume label "volume - volume of a book or music release in a collection/series or a published collection of journal issues in a serial publication" assertion.
- variant_to_population_association_subject label "variant to population association subject - an allele that has a certain frequency in a given population" assertion.
- variant_to_population_association_object label "variant to population association object - the population that is observed to have the frequency" assertion.
- variant_to_population_association_has_total label "variant to population association has total - number all populations that carry a particular allele, aka allele number" assertion.
- variant_to_population_association_has_quotient label "variant to population association has quotient - frequency of allele in population, expressed as a number with allele divided by number in reference population, aka allele frequency" assertion.
- variant_to_population_association_has_count label "variant to population association has count - number in object population that carry a particular allele, aka allele count" assertion.
- variant_to_phenotypic_feature_association_subject label "variant to phenotypic feature association subject - a sequence variant in which the allele state is associated in some way with the phenotype state" assertion.
- variant_to_gene_expression_association_predicate label "variant to gene expression association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- variant_to_gene_association_predicate label "variant to gene association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- variant_to_gene_association_object label "variant to gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- variant_to_entity_association_mixin_subject label "variant to entity association mixin subject - a sequence variant in which the allele state is associated with some other entity" assertion.
- variant_to_disease_association_subject label "variant to disease association subject - a sequence variant in which the allele state is associated in some way with the disease state" assertion.
- variant_to_disease_association_predicate label "variant to disease association predicate - E.g. is pathogenic for" assertion.
- variant_to_disease_association_object label "variant to disease association object - a disease that is associated with that variant" assertion.
- variant_as_a_model_of_disease_association_subject label "variant as a model of disease association subject - A variant that has a role in modeling the disease." assertion.
- upstream_resources label "upstream resources - An upstream InformationResource from which the resource being described directly retrieved a record of the knowledge expressed in the Edge, or data used to generate this knowledge. This is an array because there are cases where a merged Edge holds knowledge that was retrieved from multiple sources. e.g. an Edge provided by the ARAGORN ARA can expressing knowledge it retrieved from both the automat-mychem-info and molepro KPs, which both provided it with records of this single fact." assertion.
- update_date label "update date - date on which an entity was updated. This can be applied to nodes or edges" assertion.
- translation_of label "translation of - inverse of translates to" assertion.
- translates_to label "translates to - x (amino acid chain/polypeptide) is the ribosomal translation of y (transcript) if and only if a ribosome reads y (transcript) through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces x (amino acid chain/polypeptide)" assertion.
- transcript_to_gene_relationship_subject label "transcript to gene relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- transcript_to_gene_relationship_object label "transcript to gene relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- transcribed_to label "transcribed to - inverse of transcribed from" assertion.
- transcribed_from label "transcribed from - x is transcribed from y if and only if x is synthesized from template y" assertion.
- trade_name label "trade name - " assertion.
- timepoint label "timepoint - a point in time" assertion.
- temporally_related_to label "temporally related to - holds between two entities with a temporal relationship" assertion.
- temporal_interval_qualifier label "temporal interval qualifier - a constraint of a time interval placed upon the truth value of an association." assertion.
- temporal_context_qualifier label "temporal context qualifier - a constraint of time placed upon the truth value of an association. for time intervales, use temporal interval qualifier." assertion.
- taxon_to_taxon_association_subject label "taxon to taxon association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- taxon_to_taxon_association_object label "taxon to taxon association object - An association between individuals of different taxa." assertion.
- target_for label "target for - A gene is a target of a disease when its products are druggable and when a drug interaction with the gene product could have a therapeutic effect" assertion.
- systematic_synonym label "systematic synonym - more commonly used for gene symbols in yeast" assertion.
- synonym label "synonym - Alternate human-readable names for a thing" assertion.
- symbol label "symbol - Symbol for a particular thing" assertion.
- supporting_text_section_type label "supporting text section type - The section of the supporting text of a Text Mining Result within the supporting document. This is in the form of the name of the document section (e.g., Abstract, Introduction) that contains the supporting text." assertion.
- supporting_text label "supporting text - The segment of text from a document that supports the mined assertion." assertion.
- supporting_study_size label "supporting study size - The sample size used in a study that provided evidence for the association (e.g. 'n' of a cohort for a clinical study)." assertion.
- supporting_study_method_type label "supporting study method type - A type of method that was applied in a study used to generate the information used as evidence (e.g. a type of experimental assay, or statistical calculation, or computational analysis)." assertion.
- supporting_study_method_description label "supporting study method description - A uri or curie pointing to information about the methodology used to generate data supporting an Association." assertion.
- supporting_study_metadata label "supporting study metadata - Information about a study used to generate information used as evidence to support the knowledge expressed in an Association. In practice, data creators should use one of the more specific subtypes of this property." assertion.
- supporting_study_date_range label "supporting study date range - The date range over which data was collected in a study that provided evidence for an Association." assertion.
- supporting_study_context label "supporting study context - A term or terms describing the experimental setting/context in which evidence supporting the Association was generated ('context' may be defined by many factors, including taxon, model system (e.g. cell line type), tissue type, disease, etc.)." assertion.
- supporting_study_cohort label "supporting study cohort - A description of a study population/cohort that was interrogated to provide evidence for the association (e.g. the inclusion and exclusion criteria)." assertion.
- supporting_documents label "supporting documents - One or more referencable documents that report the statement expressed in an Association, or provide information used as evidence supporting this statement." assertion.
- supporting_document_year label "supporting document year - The document year (typically the publication year) for the supporting document used in a Text Mining Result." assertion.
- supporting_document_type label "supporting document type - The document type (e.g., Journal Article, Case Study, Preprint) for the supporting document used in a Text Mining Result." assertion.
- supporting_data_source label "supporting data source - An Information Resource from which data was retrieved and subsequently used as evidence to generate the knowledge expressed in an Association (e.g. through computation on, reasoning or inference over the retrieved data)." assertion.
- supporting_data_set label "supporting data set - A set of data used as evidence to generate the knowledge expressed in an Association (e.g. through computation on, reasoning or inference over the retrieved data)." assertion.
- support_graphs label "support graphs - A list of knowledge graphs that support the existence of this node." assertion.
- superclass_of label "superclass of - holds between two classes where the domain class is a super class of the range class" assertion.
- summary label "summary - executive summary of a publication" assertion.
- subject_location_in_text label "subject location in text - Character offsets for the text span(s) in the supporting text corresponding to the subject concept of the extracted assertion." assertion.
- subclass_of label "subclass of - holds between two classes where the domain class is a specialization of the range class" assertion.
- strand label "strand - The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand)." assertion.
- stoichiometry label "stoichiometry - the relationship between the relative quantities of substances taking part in a reaction or forming a compound, typically a ratio of whole integers." assertion.
- statement_qualifier label "statement qualifier - " assertion.
- start_interbase_coordinate label "start interbase coordinate - The position at which the subject nucleic acid entity starts on the chromosome or other entity to which it is located on. (ie: the start of the sequence being referenced is 0)." assertion.
- start_coordinate label "start coordinate - The position at which the subject genomic entity starts on the chromosome or other entity to which it is located on. (ie: the start of the sequence being referenced is 1)." assertion.
- species_context_qualifier label "species context qualifier - A statement qualifier representing a taxonomic category of species in which a relationship expressed in an association took place." assertion.
- socioeconomic_exposure_has_attribute label "socioeconomic exposure has attribute - connects any entity to an attribute" assertion.
- small_molecule_id label "small molecule id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" assertion.
- similar_to label "similar to - holds between an entity and some other entity with similar features." assertion.
- sex_qualifier label "sex qualifier - a qualifier used in a phenotypic association to state whether the association is specific to a particular sex." assertion.
- severity_qualifier label "severity qualifier - a qualifier used in a phenotypic association to state how severe the phenotype is in the subject" assertion.
- serial_type label "serial type - Should generally be set to an ontology class defined term for 'serial' or 'journal'." assertion.
- serial_id label "serial id - Serials (journals) should have industry-standard identifier such as from ISSN." assertion.
- sequence_variant_qualifier label "sequence variant qualifier - a qualifier used in an association with the variant" assertion.
- sequence_variant_modulates_treatment_association_subject label "sequence variant modulates treatment association subject - variant that modulates the treatment of some disease" assertion.
- sequence_variant_modulates_treatment_association_object label "sequence variant modulates treatment association object - treatment whose efficacy is modulated by the subject variant" assertion.
- sequence_variant_id label "sequence variant id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" assertion.