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- ce2f83c013a711edb084ed90e8a0b9fc type Dataset assertion.
- ce2f83c013a711edb084ed90e8a0b9fc type Object assertion.
- ce2f83c013a711edb084ed90e8a0b9fc name "Rhometa manuscript supporting data" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc contactPoint _3 assertion.
- ce2f83c013a711edb084ed90e8a0b9fc conformsTo Object assertion.
- ce2f83c013a711edb084ed90e8a0b9fc about _1 assertion.
- ce2f83c013a711edb084ed90e8a0b9fc about _2 assertion.
- ce2f83c013a711edb084ed90e8a0b9fc description "Rhometa includes various models to perform population recombination rate estimation on metagenomic datasets. It is primarily built using nextflow, a workflow management tool and the python programming language. Here a repository of all the results generated for Rhometa and the scripts used is provided. In some cases, different pipelines were used during the course of developing rhometa such as our nextflow LDhat pipeline. LDHat is a population recombination rate estimation program for aligned sequences and simulation pipelines etc, all relevant scripts and nextflow works are included where applicable. The github repositories for all pipelines are provided in the accompanying manuscript. File names starting with “figure” are all related to the evaluation of different forms of simulated data. The simulated files are not included to save space, but the scripts used to generate the files are and final results are included. The file Lookup_tables.zip is related to all the lookup tables used during the analysis. Lookup tables themselves are very large and as such are not included, but all relevant scripts used to generate them are. The file s_pneumoniae.zip is related to the analysis of a real dataset involving an S. pneumoniae transformation experiment. Experiment accession codes are included but not bam files and the reference. The details of how the BAM was generated and the reference file used are described in the manuscript. All results and scripts used are included." assertion.
- ce2f83c013a711edb084ed90e8a0b9fc citation 0w2e-tt98 assertion.
- ce2f83c013a711edb084ed90e8a0b9fc contentUrl "./" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc creator Aaron.Darling@uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc creator Dominik.Beck@uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc creator Justin.Seymour@uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc creator Martin.Ostrowski@uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc creator Matthew.DeMaere@uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc creator sidaswar.krishnan-1@student.uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc datePublished "2022-08-05T01:51:49.692Z" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart Lookup_tables.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart figure_1.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart figure_2and3.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart figure_S1.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart figure_S2.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart figure_S3.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart figure_S4.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc hasPart s_pnemoniae.zip assertion.
- ce2f83c013a711edb084ed90e8a0b9fc identifier _4 assertion.
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- ce2f83c013a711edb084ed90e8a0b9fc identifier "ce2f83c013a711edb084ed90e8a0b9fc" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc license _6 assertion.
- ce2f83c013a711edb084ed90e8a0b9fc publisher www.uts.edu.au assertion.
- ce2f83c013a711edb084ed90e8a0b9fc dateCreated "2022-08-05T01:51:49.692Z" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc memberOf uts_root_collection assertion.
- ce2f83c013a711edb084ed90e8a0b9fc keywords "analysed data and scripts used" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc yearCreated "2022" assertion.
- ce2f83c013a711edb084ed90e8a0b9fc yearPublished "2022" assertion.
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- ce2f83c013a711edb084ed90e8a0b9fc mentions 2022.08.04.502887v1 assertion.